About me
My name is Gufeng Yu from Yueyang, Hunan. I’m currently a Ph.D. candidate at the Department of Computer Science and Engineering, Shanghai Jiao Tong University, advised by Prof. Yang Yang. I obtained my Bachelor’s degree from School of Life Sciences and Biotechnology, Shanghai Jiao Tong University in 2023.
My research interest is AI for Science. Specifically, the main research areas are the application of AI in genomics and organic chemistry. Examples include gene regulatory network reconstruction, cancer genomics and chemical reaction prediction.
Recent News
- Nov. 2023, MIGGRI has been accepted by PLOS Computational Biology!
Education
- Ph.D. in Computer Science and Technology, Shanghai Jiao Tong University, 2023-Now
- B.S. in Biotechnology (Bioinformatics), Shanghai Jiao Tong University, 2019-2023
Publications
(#equal contribution, *corresponding)
- Prediction of chemical reaction yields with large-scale multi-view pre-training
Runhan Shi, Gufeng Yu, Xiaohong Huo, Yang Yang*
Journal of Cheminformatics, 2024, 16(1): 1-16.
[Paper] - Enhancing Cancer Gene Prediction through Aligned Fusion of Multiple PPI Networks Using Graph Transformer Models
Zebei Han, Gufeng Yu, Yang Yang*
2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Istanbul, Turkiye, 2023, pp. 542-547.
[Paper] - MIGGRI: A multi-instance graph neural network model for inferring gene regulatory networks for Drosophila from spatial expression images
Yuyang Huang#, Gufeng Yu#, Yang Yang*
PLOS Computational Biology, 2023, 19(11): e1011623.
[Paper]
Honors and Awards
Excellent Graduate | Shanghai Jiao Tong University (2023)
Gold Medal and Best Software Project Nomination | iGEM (2021)